kdetrees 0.1.5 – Nonparametric method for identifying Discordant Phylogenetic Trees

kdetrees 0.1.5

:: DESCRIPTION

kdetrees is a non-parametric method for estimating distributions of phylogenetic trees, with the goal of identifying trees that are significantly different from the rest of the trees in the sample.

::DEVELOPER

Grady Weyenberg and Ruriko Yoshida

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux/MacOsX
  • R package

:: DOWNLOAD

 kdetrees

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Apr 24. pii: btu258.
kdetrees: non-parametric estimation of phylogenetic tree distributions.
Weyenberg G, Huggins PM, Schardl CL, Howe DK, Yoshida R.

Discordant – A Novel Approach for Differential Correlation

Discordant

:: DESCRIPTION

Discordant is a package for the analysis of molecular feature pairs derived from –omics data to determine if they correlate differently between phenotypic groups.

::DEVELOPER

Discordant team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux
  • R

:: DOWNLOAD

 Discordant

:: MORE INFORMATION

Citation

The Discordant Method: A Novel Approach for Differential Correlation.
Siska C, Bowler R, Kechris K.
Bioinformatics. 2015 Oct 31. pii: btv633.