DeepMethyl 20151121 – Predicting DNA Methylation State of CpG Dinucleotide

DeepMethyl 20151121

:: DESCRIPTION

DeepMethyl is a web server for predicting the DNA Methylation State of CpG Dinucleotide using features inferred from three-dimensional genome topology (based on Hi-C) and DNA sequence patterns.

::DEVELOPER

Z. WANG LAB

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Predicting DNA Methylation State of CpG Dinucleotide Using Genome Topological Features and Deep Networks.
Wang Y, Liu T, Xu D, Shi H, Zhang C, Mo YY, Wang Z.
Sci Rep. 2016 Jan 22;6:19598. doi: 10.1038/srep19598.

Dishuffle – RNA Dinucleotide Shuffle

Dishuffle

:: DESCRIPTION

Dishuffle is a web interface to a local implementation of the Altschul-Erikson dinucleotide shuffle algorithm, described in “Significance of nucleotide sequence alignments: A method for random sequence permutation that preserves dinucleotide and codon usage”

:: DEVELOPER

Clote Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • Python

:: DOWNLOAD

 Dishuffle

:: MORE INFORMATION

Citation

RNA. 2005 May;11(5):578-91.
Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency.
Clote P, Ferré F, Kranakis E, Krizanc D.