IBDmap

:: DESCRIPTION

IBDmap is the factorial HMM based algorithm.Several models are supported in this implementation, including both the standard model and the 4-track model which uses a first order Markovian model for the LD process in a subset of the founders.

::DEVELOPER

Laboratory of Computational Biology at the Technion.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Windows/Linux/MacOsX
• Java

:: DOWNLOAD

 IBDmap

:: MORE INFORMATION

Citation

Bioinformatics. 2010 Jun 15;26(12):i175-82. doi: 10.1093/bioinformatics/btq204.
Estimating genome-wide IBD sharing from SNP data via an efficient hidden Markov model of LD with application to gene mapping.
Bercovici S, Meek C, Wexler Y, Geiger D.