:: DESCRIPTION
BCALM is a bioinformatics tool for constructing the compacted de Bruijn graph from sequencing data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Rayan Chikhi, Antoine Limasset and Paul Medvedev,
Compacting de Bruijn graphs from sequencing data quickly and in low memory,
Bioinformatics, 32 (12), i201-i208 2016 Jun 15
:: DESCRIPTION
deBGA is a seed-and-extension-based read alignment tool. It is suitable for aligning various kinds of high-throughput sequencing reads to multiple similar reference genomes.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
deBGA: read alignment with de Bruijn Graph-based seed and extension.
Liu B, Guo H, Brudno M, Wang Y.
Bioinformatics. 2016 Jul 4. pii: btw371.
:: DESCRIPTION
MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph to achieve low memory usage, whereas its goal is not to make memory usage as low as possible.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.
Li D, Liu CM, Luo R, Sadakane K, Lam TW.
Bioinformatics. 2015 Jan 20. pii: btv033.
:: DESCRIPTION
TwoPaCo is a simple and scalable low memory algorithm for the direct construction of the compacted de Bruijn graph from a set of complete genomes.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics, 33 (24), 4024-4032 2017 Dec 15
TwoPaCo: An Efficient Algorithm to Build the Compacted De Bruijn Graph From Many Complete Genomes
Ilia Minkin , Son Pham , Paul Medvedev
