BASE 3.18.2 – Microarray Data Management & Analysis

BASE 3.18.2

:: DESCRIPTION

BASE (BioArray Software Environment) is a comprehensive free web-based database solution for the massive amounts of data generated by microarray analysis.

::DEVELOPER

Jari Häkkinen @ Lund University

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

BASE

:: MORE INFORMATION

Citation:

Johan Vallon-Christersson, Nicklas Nordborg, Martin Svensson and Jari Häkkinen  ,
BASE – 2nd generation software for microarray data management and analysis
BMC Bioinformatics 2009, 10:33

PIQMIe 1.0 – Proteomics Identifications & Quantitations Data Management & Integration Service

PIQMIe 1.0

:: DESCRIPTION

PIQMIe is a web-based tool that aids in the data management, analysis and visualization of semi-quantitative mass spectrometry (MS)-based proteomics experiments, in particular those using the stable isotope labeling with amino acids in cell culture (SILAC).

::DEVELOPER

PIQMIe team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

PIQMIe

:: MORE INFORMATION

Citation

PIQMIe: a web server for semi-quantitative proteomics data management and analysis.
Kuzniar A, Kanaar R.
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W100-6. doi: 10.1093/nar/gku478.

iLAP 1.3.3 – Laboratory Data Management, Analysis and Protocol Development

iLAP 1.3.3

:: DESCRIPTION

 iLAP (Laboratory data management, Analysis and Protocol development) combines experimental protocol development, wizard-based data acquisition and high-throughput data analysis into one single, integrated system.

::DEVELOPER

the Division of Bioinformatics, Innsbruck Medical University

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • PostgreSQL
  • JEE
  • Apache Tomcat

:: DOWNLOAD

  iLAP

:: MORE INFORMATION

Citation

Stocker G, Fischer M, Rieder D, Bindea G, Kainz S, Oberstolz M, McNally JG and Trajanoski Z,
iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis,
BMC Bioinformatics, 2009 Nov 10(6)

Goby 3.3.1 / GobyWeb 2.3.1 – Next-generation Sequencing Data Management

Goby 2.3.5 / GobyWeb 2.3.1

:: DESCRIPTION

Goby is a next-generation sequencing data management framework designed to facilitate the implementation of efficient data analysis pipelines.

GobyWeb is a web application to aid with the analysis of high-throughput sequencing (HTS) data.

::DEVELOPER

Campagne Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  •  Java

:: DOWNLOAD

 Goby , GobyWeb 

:: MORE INFORMATION

Citation

PLoS One. 2013 Jul 23;8(7):e69666. doi: 10.1371/journal.pone.0069666. Print 2013.
GobyWeb: simplified management and analysis of gene expression and DNA methylation sequencing data.
Dorff KC, Chambwe N, Zeno Z, Simi M, Shaknovich R, Campagne F.
/iframe>