PARalyzer 2.0 – PAR-CLIP Data Analyzer

PARalyzer 2.0

:: DESCRIPTION

PARalyzer is a tool for mapping high-confidence sites from PAR-CLIP (photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation) deep-sequencing data.

::DEVELOPER

Uwe Ohler’s Research Group

:: REQUIREMENTS

  • Linux
  • Java
  • Bowtie

:: DOWNLOAD

 PARalyzer

:: MORE INFORMATION

Citation

Genome Biol. 2011 Aug 18;12(8):R79. doi: 10.1186/gb-2011-12-8-r79.
PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data.
Corcoran DL, Georgiev S, Mukherjee N, Gottwein E, Skalsky RL, Keene JD, Ohler U.

LDA 1.6.2 – Lipid Data Analyzer

LDA 1.6.2

:: DESCRIPTION

LDA provides standardisation, a statistics module for results analysis, a batch mode for unattended analysis of several runs and a 3D viewer for the manual verification.

::DEVELOPER

Genomics & Bioinformatics Graz, Graz University of Technology

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

 LDA

:: MORE INFORMATION

Citation

Hartler J, Trötzmüller M, Chitraju C, Spener F, K?feler HC, Thallinger GG.
Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data.
Bioinformatics. 2011 Feb 15, 27(4), 572-577. Epub 2010 Dec 17.