DASH 1.0 – Domain Analysis of Symbionts and Hosts

DASH 1.0

:: DESCRIPTION

DASH  determines for a pathogen, domains within its genes, and the host genes sharing those domains.

::DEVELOPER

Spouge Research Group

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

BMC Res Notes. 2013 May 24;6:209. doi: 10.1186/1756-0500-6-209.
Domain analysis of symbionts and hosts (DASH) in a genome-wide survey of pathogenic human viruses.
Gonzalez MW1, Spouge JL.

DASH – Database of Aligned Structural Homologs

DASH

:: DESCRIPTION

DASH is a database of structural alignments for all known structurally homologous protein domains and chains in the PDB.

::DEVELOPER

Department of Genome Informatics; Research Institute for Microbial Diseases; Osaka University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res, 47 (W1), W5-W10 2019 Jul 2
MAFFT-DASH: Integrated Protein Sequence and Structural Alignment
John Rozewicki , Songling Li, Karlou Mar Amada, Daron M Standley, Kazutaka Katoh

DASH 1.1.0 – DASH Associates Shared Haplotypes

DASH 1.1.0

:: DESCRIPTION

DASH (DASH Associates Shared Haplotypes) builds upon pairwise IBD shared segments to infer clusters of IBD individuals. Briefly, for each locus, DASH constructs a graph with links based on IBD at that locus, and uses an iterative min-cut approach to identify clusters. These are densely connected components, each sharing a haplotype. As DASH slides the local window along the genome, links representing new shared segments are added and old ones expire; these changes cause the resultant connected components to grow and shrink.

::DEVELOPER

Sasha Gusev 

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux

:: DOWNLOAD

 DASH

:: MORE INFORMATION

Citation

Alexander Gusev, Eimear E. Kenny, Jennifer K. Lowe, Jaqueline Salit, Richa Saxena, Sekar Kathiresan, David M. Altshuler, Jeffrey M. Friedman, Jan L. Breslow, Itsik Pe’er.
DASH: A Method for Identical-by-Descent Haplotype Mapping Uncovers Association with Recent Variation,
The American Journal of Human Genetics 2011 Volume 88, Issue 6, 706-717