Tag: Curves

Curves+ 2.6 – Analyzing the Conformation of Nucleic Acid Structures

Curves+ 2.6

:: DESCRIPTION

Curves+ is a revised version of the Curves software for analyzing the conformation of nucleic acid structures.

::DEVELOPER

Richard Lavery (r.lavery@ibcp.fr)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Fortran

:: DOWNLOAD

 Curves+

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W68-73. doi: 10.1093/nar/gkr316. Epub 2011 May 10.
CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures.
Blanchet C1, Pasi M, Zakrzewska K, Lavery R.

ALDER 1.03 – Compute Weighted Linkage Disequilibrium (LD) Curves

ALDER 1.03

:: DESCRIPTION

ALDER (Admixture-induced Linkage Disequilibrium for Evolutionary Relationships) is a software package that computes weighted linkage disequilibrium (LD) curves, which can be used to infer admixture parameters including dates, mixture proportions, and phylogeny.

::DEVELOPER

Berger Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 ALDER

:: MORE INFORMATION

Citation

Loh P-R, Lipson M, Patterson N, Moorjani P, Pickrell JK, Reich D, and Berger B.
Inference of Admixture Parameters in Human Populations Using Weighted Linkage Disequilibrium.

StAR – Statistical Analysis of Receiver Operating Characteristic (ROC) Curves

StAR

:: DESCRIPTION

StAR is a web server and standalone program for the statistical comparison of several binary classifiers. This server assesses the statistical significance of the observed differences between two or more classifiers by means of their ROC (Receiver Operating Characteristic) curves. The statistical comparison relies on a non-parametric test and the area under the ROC curves (AUCs). The server is able to perform the simultaneous pairwise comparison of many binary classifiers.

::DEVELOPER

Francisco Melo Ledermann

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 StAR

:: MORE INFORMATION

Citation

Vergara, I.A., Norambuena, T., Ferrada, E., Slater, A.W. and Melo, F. (2008)
StAR: a simple tool for the statistical comparison of ROC curves.
BMC B ioinformatics 9, 265.