XPEB 0.1.1 – Cross-population Empirical Bayes

XPEB 0.1.1

:: DESCRIPTION

XPEB is an empiral Bayes approach that integrates information from two GWAS studies, a base- and a target-GWAS conducted in different ethnic groups, to improve the detection of associations in the target-GWAS.

:: DEVELOPER

Tang Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • R package

:: DOWNLOAD

XPEB

:: MORE INFORMATION

Citation

Coram MA, Candille SI, Duan Q, Chan KH, Li Y, Kooperberg C, Reiner AP, Tang H.
Leveraging Multi-ethnic Evidence for Mapping Complex Traits in Minority Populations: An Empirical Bayes Approach.
Am J Hum Genet. 2015 May 7;96(5):740-52.

XP-CLR 1.0 – Cross-population Composite Likelihood Ratio Test

XP-CLR 1.0

:: DESCRIPTION

XP-CLR (cross-population composite likelihood ratio test) uses allele frequency differentiation at linked loci to detect selective sweeps.

::DEVELOPER

Reich laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

XP-CLR

:: MORE INFORMATION

Citation:

Population differentiation as a test for selective sweeps
Hua Chen, Nick Patterson and David Reich
Genome Res. 2010. 20: 393-402 January 19, 2010, doi:10.1101/gr.100545.109