Tag: CRAC

CRAC 2.5.2 – An Integrated RNA-Seq Read Analysis

CRAC 2.5.2

:: DESCRIPTION

CRAC is designed to find splice junctions, fusion junctions, SNVs, indels in reads. It focuses on the unique location of a read. It performs particularly well on long reads. It is designed for resequencing projects and is therefore able to map reads coming from the same species or a close one.

::DEVELOPER

Bonsai Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  •  Linux

:: DOWNLOAD

 CRAC

:: MORE INFORMATION

Citation

Genome Biol. 2013 Mar 28;14(3):R30.
CRAC: an integrated approach to the analysis of RNA-seq reads.
Philippe N, Salson M, Commes T, Rivals E.

CracTools 1.24 / digitagCT 1.0.2 – Integrated pipelines for RNA-Seq Analysis using CRAC

CracTools 1.24 / digitagCT 1.0.2

:: DESCRIPTION

CracTools is a set of pipelines allowing to perform diverse RNA-Seq analysis such as chimeras detection, splicing variant detection, SNPs calling, and such.

The digitagCT distribution is part of the CracTools

::DEVELOPER

CracTools team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 CracTools ,digitagCT

:: MORE INFORMATION

Citation:

Nucleic Acids Res. 2014 Mar;42(5):2820-32. doi: 10.1093/nar/gkt1300. Epub 2013 Dec 18.
Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome.
Philippe N1, Bou Samra E, Boureux A, Mancheron A, Rufflé F, Bai Q, De Vos J, Rivals E, Commes T.