DICER – Differential Correlation in Expression for meta-module Recovery

DICER

:: DESCRIPTION

DICER is a tool for advanced analysis of differential co-expression (DC) case-control gene expression data.

::DEVELOPER

Ron Shamir’s lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/ MacOsX
  • Java 

:: DOWNLOAD

 DICER

:: MORE INFORMATION

Citation

PLoS Comput Biol. 2013;9(3):e1002955. doi: 10.1371/journal.pcbi.1002955. Epub 2013 Mar 7.
Dissection of regulatory networks that are altered in disease via differential co-expression.
Amar D1, Safer H, Shamir R.

CorSig – Statistical Inference of Correlation Significance

CorSig

:: DESCRIPTION

CorSig: A General Framework for Estimating Statistical Significance of Correlation and Its Application to Gene Co-expression Analysis.

::DEVELOPER

 the Tsai lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • R
:: DOWNLOAD

 CorSig

:: MORE INFORMATION

Citation

PLoS One. 2013 Oct 23;8(10):e77429. doi: 10.1371/journal.pone.0077429. eCollection 2013.
CorSig: a general framework for estimating statistical significance of correlation and its application to gene co-expression analysis.
Wang HQ1, Tsai CJ.

ACT – Aggregation and Correlation Toolbox for analyses of Genome Tracks

ACT

:: DESCRIPTION

The ACT (aggregation and correlation toolbox) is an aggregation and correlation toolbox for analyses of genome tracks.

::DEVELOPER

Gerstein Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

  ACT

:: MORE INFORMATION

Citation

J Jee*, J Rozowsky*, KY Yip*, L Lochovsky, R Bjornson, G Zhong, Z Zhang, Y Fu, J Wang, Z Weng, M Gerstein.
ACT: Aggregation and Correlation Toolbox for Analyses of Genome Tracks. (2011)
Bioinformatics. 2011 Apr 15;27(8):1152-4.