NN50-calculator 0.5 – Evaluate the Correctness of Genome Assemblies

NN50-calculator 0.5

:: DESCRIPTION

NN50-calculator (Normalized N50 calculator) is a tool for evaluating the correctness of genome assemblies.

::DEVELOPER

Veli Mäkinen, Leena Salmela

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler
  • Python

:: DOWNLOAD

 NN50-calculator

:: MORE INFORMATION

Citation
BMC Bioinformatics. 2012 Oct 3;13:255. doi: 10.1186/1471-2105-13-255.
Normalized N50 assembly metric using gap-restricted co-linear chaining.
Mäkinen V, Salmela L, Ylinen J.

Validate GTF 1.0 – Check GTF file for Correctness

Validate GTF 1.0

:: DESCRIPTION

Validate GTF is a flexible Perl script that checks a GTF file for correctness. It can detect most common syntactic errors, such as including the stop codon within the CDS annotation. It can also detect semantic errors, such as annotated coding sequence that contains stop codons spanning splice sites.

::DEVELOPER

The Brent Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

  Validate GTF

:: MORE INFORMATION

Exit mobile version