ElemeNT Ver 2 – Tool for Detection of core Promoter Elements

ElemeNT Ver 2

:: DESCRIPTION

ElemeNT (Elements Navigation Tool) is an interactive tool for rapid and convenient detection of core promoter elements within a given sequence, implemented in Perl programming language.

::DEVELOPER

Juven-Gershon Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Transcription. 2015;6(3):41-50. doi: 10.1080/21541264.2015.1067286.
ElemeNT: a computational tool for detecting core promoter elements.
Sloutskin A, Danino YM, Orenstein Y, Zehavi Y, Doniger T, Shamir R, Juven-Gershon T.

CoRe v1.0.2 – Identifying Core-fitness Genes in Genome-wide Pooled CRISPR-Cas9 Screens

CoRe v1.0.2

:: DESCRIPTION

CoRe is an R package implementing existing and novel methods for the identification of core-fitness genes (at two different level of stringency) from joint analyses of multiple CRISPR-Cas9 screens.

::DEVELOPER

CoRe team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
R

:: DOWNLOAD

CoRe

:: MORE INFORMATION

Citation

Vinceti A, Karakoc E, Pacini C, Perron U, De Lucia RR, Garnett MJ, Iorio F.
CoRe: a robustly benchmarked R package for identifying core-fitness genes in genome-wide pooled CRISPR-Cas9 screens.
BMC Genomics. 2021 Nov 17;22(1):828. doi: 10.1186/s12864-021-08129-5. PMID: 34789150.

ELASPIC – Ensemble Learning Approach for Stability Prediction of Interface and Core Mutations

ELASPIC

:: DESCRIPTION

ELASPIC constructs homology models of domains and domain-domain interactions, and uses those models, together with sequential and other features, to predict the energetic impact of a mutation on the stability of a single domain or the affinity between two domains.

::DEVELOPER

Kim Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

ELASPIC

:: MORE INFORMATION

Citation

ELASPIC web-server: proteome-wide structure based prediction of mutation effects on protein stability and binding affinity.
Witvliet D, Strokach A, Giraldo-Forero AF, Teyra J, Colak R, Kim PM.
Bioinformatics. 2016 Jan 21. pii: btw031.

MHC – Matrix Optimization Technique for Predicting MHC binding Core

MHC

:: DESCRIPTION

MHC server was used Matrix Optimization Technique to predict MHC binding core.

::DEVELOPER

G P S Raghava
,
:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Singh, H. and Raghava, G. P. S. (2002)
Detection of Orientation of MHC Class II Binding Peptides Using Bioinformatics Tools
Biotech Software and Internet Report, 3:146

Core 0.10 – Predict Protein Complex from PPI network

Core 0.10

:: DESCRIPTION

Core is an open source program for predicting protein complex from PPI network.

::DEVELOPER

Bioinformatics Research Group of Hong Kong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

Core

:: MORE INFORMATION

Citation:

Predicting protein complexes from PPI data: a core-attachment approach.
Leung HC, Xiang Q, Yiu SM, Chin FY.
J Comput Biol. 2009 Feb;16(2):133-44.