SPLICEATOR 2.1 – Multi-species Splice Site prediction program using Convolutional Neural Networks

SPLICEATOR 2.1

:: DESCRIPTION

SPLICEATOR is an eukaryotic splice sites prediction program. It is based on convolutional neural network architecture.

::DEVELOPER

SPLICEATOR team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

SPLICEATOR

:: MORE INFORMATION

Citation

Scalzitti N, Kress A, Orhand R, Weber T, Moulinier L, Jeannin-Girardon A, Collet P, Poch O, Thompson JD.
Spliceator: multi-species splice site prediction using convolutional neural networks.
BMC Bioinformatics. 2021 Nov 23;22(1):561. doi: 10.1186/s12859-021-04471-3. PMID: 34814826; PMCID: PMC8609763.

EDCNN -Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network

EDCNN

:: DESCRIPTION

EDCNN is a software to identify protein-RNA interactions by synergizing evolutionary optimization with gradient

::DEVELOPER

EDCNN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

EDCNN

:: MORE INFORMATION

Citation

Wang Y, Yang Y, Ma Z, Wong KC, Li X.
EDCNN: Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network.
Bioinformatics. 2021 Oct 25:btab739. doi: 10.1093/bioinformatics/btab739. Epub ahead of print. PMID: 34694393.