:: DESCRIPTION
P2S is a small utility program to convert formats from plink to sumstat and vice versa.The plink program uses the LINKAGE input format, which is a widely used format in genetic linkage and association analysis. The sumstat suite of programs has been developed using a different input format. Specifically, it lists each SNP on a separate input line (row) rather than an input column.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
sf-convert is a format conversion tool for structure factor files that supports more than a dozen file formats.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
KEGGtranslator is an easy-to-use stand-alone application that can visualize and convert KGML formatted XML-files into multiple output formats. Unlike other translators, KEGGtranslator supports a plethora of output formats, is able to augment the information in translated documents (e.g., MIRIAM annotations) beyond the scope of the KGML document, and amends missing components to fragmentary reactions within the pathway to allow simulations on those. KEGGtranslator converts KEGG files (KGML formatted XML-files) to SBML, BioPAX, SIF, SBGN, SBML-qual, GML, GraphML, JPG, GIF, LaTeX, etc.
::DEVELOPER
the Center for Bioinformatics Tübingen (Zentrum für Bioinformatik Tübingen, ZBIT).
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2011 Aug 15;27(16):2314-5. doi: 10.1093/bioinformatics/btr377. Epub 2011 Jun 23.
KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats.
Wrzodek C, Dräger A, Zell A.
:: DESCRIPTION
The program gffread can be used to validate, filter, convert and perform various other operations on GFF (General Feature Format) files.
::DEVELOPER
The Center for Computational Biology at Johns Hopkins University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Pertea G, Pertea M.
GFF Utilities: GffRead and GffCompare.
F1000Res. 2020 Apr 28;9:ISCB Comm J-304. doi: 10.12688/f1000research.23297.2. PMID: 32489650; PMCID: PMC7222033.
:: DESCRIPTION
CSML2SBML is a format convertor for quantitative biological pathways, converting models expressed in CSML into SBML, enabling simulations or parameter estimation with compliant tools such as CellDesigner and COPASI
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
CSML2SBML: A novel tool for converting quantitative biological pathway models from CSML into SBML.
Li C, Nagasaki M, Ikeda E, Sekiya Y, Miyano S.
Biosystems. 2014 Jul;121:22-8. doi: 10.1016/j.biosystems.2014.05.004.
:: DESCRIPTION
Sig2BioPAX is a Java program that can be used to convert structured text files describing molecular interactions into the BioPAX Level 3 standard format.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Source Code Biol Med. 2011 Mar 21;6:5. doi: 10.1186/1751-0473-6-5.
Sig2BioPAX: Java tool for converting flat files to BioPAX Level 3 format.
Webb RL, Ma’ayan A.
