Tag: converter

SFF Workbench 1.5.1 – Simple SFF File Editor & Converter

SFF Workbench 1.5.1

:: DESCRIPTION

SFF Workbench (Standard flowgram format , SFF Tools) is an easy to use SFF file viewer, editor and converter. It is the first and only SFF editor with graphic interface on the entire bioinformatics market! With this tool we wanted to help the biologists to concentrate on their work instead of wasting time poking commands in an obscure text console.

The Roche/454 platform produces sequence reads in SFF format. SFF file contains the flow grams and quality scores for each read in addition to other information.

::DEVELOPER

Heracle BioSoft

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

SFF Workbench

:: MORE INFORMATION

ArtWonk v4.4.1740 – DNA to MIDI Converter

ArtWonk v4.4.1740

:: DESCRIPTION

ArtWonk produces music, visuals and wordplay based on generative algorithms you interactively create by connecting modules (graphical objects representing functions and processes) in real time, adjusting the parameters as you go, in a drag & drop environment especially designed to be fast to learn, fast to use.

Source material can be anything at all: Fractals, DNA, EEGs, EKGs, stock quotes, you name it. Built in data extraction reads data from virtually any source, and an extensive DNA editor opens mountains of public domain genetic sequences to explore.

Genetic Music From DNA and Protein

::DEVELOPER

John Dunn and Algorithmic Arts

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

ArtWonk

:: MORE INFORMATION

Citation:

Peter Hamlin
ALGORITHMIC ARTSARTWONK 1.2 (WIN)
2004 issue of Electronic Musician Magazine.

lnkg2lmlnk 20120312 / lnkg2lmm 20070901 – Converter from Linkage-style to Morgan ver 3 style data files

lnkg2lmlnk 20120312 / lnkg2lmm 20070901

:: DESCRIPTION

lnkg2lmlnk is a new converter from Linkage-style to Morgan ver 3 style data files

lnkg2lmm is a Perl script to convert linkage-style files to MORGAN-lm_markers-style files.

::DEVELOPER

Ellen M. Wijsman

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 lnkg2lmlnk / lnkg2lmm

:: MORE INFORMATION

Citation:

Am J Hum Genet. 2006 Nov;79(5):846-58. Epub 2006 Sep 20.
Multipoint linkage analysis with many multiallelic or dense diallelic markers: Markov chain-Monte Carlo provides practical approaches for genome scans on general pedigrees.
Wijsman EM1, Rothstein JH, Thompson EA.

ALTER 1.3.4 – ALignment File Format Converter

ALTER 1.3.4

:: DESCRIPTION

ALTER (ALignment Transformation EnviRonment) is a web-based tool to transform between multiple sequence alignment formats. ALTER focuses on the specifications of mainstream alignment and analysis programs rather than on the conversion among more or less specific formats.

::DEVELOPER

the Posada lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / MacOsX / Linux
  • Java

:: DOWNLOAD

 ALTER

:: MORE INFORMATION

Citation:

Glez-Peña D; D. Gómez-Blanco; M. Reboiro-Jato; F. Fdez-Riverola; D. Posada (2010)
ALTER: program-oriented format conversion of DNA and protein alignments.
Nucleic Acids Research. (2010) 38 (suppl 2): W14-W18.doi: 10.1093/nar/gkq321

Formatomatic 0.8.1 – Population Genetic File Creator and Converter

Formatomatic 0.8.1

:: DESCRIPTION

Formatomatic creates infiles for several population genetic analysis programs from csv, genepop or convert* (excel) files. It only handles diploid microsatellite data for now.

::DEVELOPER

Nick Manoukis

:: SCREENSHOTS

Formatomatic

:: REQUIREMENTS

  • Linux / WIndows/ MacOsX
  • Java

:: DOWNLOAD

 Formatomatic

:: MORE INFORMATION

Citation

Manoukis, N.C. 2007.
FORMATOMATIC: A program for converting diploid allelic data between common formats for population genetic analysis.
Molecular Ecology Notes, 7(4):592 – 593

Open Babel 2.3.2 – Converter for Chemistry & Molecular Modeling Data Files

Open Babel 2.3.2

:: DESCRIPTION

Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It’s an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.

::DEVELOPER

Open Babel Team

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / MacOsX /  Linux

:: DOWNLOAD

Open Babel

:: MORE INFORMATION

Citation

Rajarshi Guha, Michael T. Howard, Geoffrey R. Hutchison, Peter Murray-Rust, Henry Rzepa, Christoph Steinbeck, Joerg Kurt Wegner, Egon Willighagen.
The Blue Obelisk – Interoperability in Chemical Informatics.
J. Chem. Inf. Model. 2006, 46, 991-998.

Fas2Nex – .FAS to .NEX converter

Fas2Nex

:: DESCRIPTION

Fas2Nex  can read a .FAS (FASTA) file and save it as .NEX (NEXUS) file (or again as a .fas file) for phylogenetic analysis with PAUP*, with the option of removing columns of characters consisting only of gaps. If necessary, the ends of short sequences in the .fas file will be padded to full length.

::DEVELOPER

Dr.  Philipp  Schlüter

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 Fas2Nex

:: MORE INFORMATION

Chemulator – Converter for Chemical Concentrations

Chemulator

:: DESCRIPTION

Chemulator converts concentration units (e.g. mg/l) into other concentration units (e.g. into molar concentrations).

::DEVELOPER

SequentiX

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

Chemulator

:: MORE INFORMATION

This software is free for private and scientific purposes!

ABI2FASTA 1.1.2 – ABI to FASTA converter

ABI2FASTA 1.1.2

:: DESCRIPTION

ABI2FASTA (ABI to FASTA Converter)  can batch convert multiple ABI chromatogram files to FASTA files, with a single click.ABI to FASTA Converter offers a great relief for molecular biologists that must convert hundreds or thousands of ABI/AB chromatogram files manually. With this automatic ABI to FASTA Converter you can convert hundreds of ABI chromatogram files in seconds. All with A SINGLE PUSH OF A BUTTON! Now the ABI to FASTA converter can also automatically trim low quality ends from your chromatograms

::DEVELOPER

Heracle BioSoft

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

ABI2FASTA

:: MORE INFORMATION

The free version allows you to convert a limited number of files. The registered version does not have this limitation. Purchase url.