GSCA / cGSCA – Gene Set Control Analysis

GSCA / cGSCA

:: DESCRIPTION

GSCA is a new computational framework for linking gene sets with transcriptional control.

C-GSCA tool performs a hierarchical clustering of over-represented samples found by GSCA.

::DEVELOPER

GSCA team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Server

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Exp Hematol. 2013 Apr;41(4):354-66.e14. doi: 10.1016/j.exphem.2012.11.008. Epub 2012 Dec 4.
Gene set control analysis predicts hematopoietic control mechanisms from genome-wide transcription factor binding data.
Joshi A1, Hannah R, Diamanti E, Göttgens B.

SIBASS 1.4 – Association Test using Siblings as Controls

SIBASS 1.4

:: DESCRIPTION

SIBASSOC is a program for carrying out association studies using siblings as controls.

::DEVELOPER

Dave Curtis

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

SIBASS

:: MORE INFORMATION

Citation:

Curtis, 1997.
Use of siblings as controls in case-control association studies.
Ann Hum Genet, 61.

ArrayMaker 2.6 – Provides Robotic Control of Microarrayer Robots

ArrayMaker 2.6

:: DESCRIPTION

ArrayMaker provides high performance robotic control of microarrayer robots with an incredibly intuitive, easy to use interface. ArrayMaker is optimized for use with the new generation of ultra fast linear servo driven arrayers, yet it is backwards compatible with the original MGuide style of ball-screw driven arrayers.

Features highly flexible configuration options, orange packing, replicate spots, replicate arrays, multiple slide and plate orientations.

::DEVELOPER

Derisi Lab

:: SCREENSHOTS

:: REQUIREMENTS

Windows 98/2000/NT/XP, Galil DMC-1832 Series PCI Bus Controller Card

:: DOWNLOAD

ArrayMaker 2.6, File Size:2,494K

:: MORE INFORMATION

This version has a new parameter in the “motor.cfg” file for a separate acceleration value for the x-stage during test prints. This value should be entered on the 19th line of your “motor.cfg” file, inserted between the “HPrintZ” line and the “SpeedX” line.