CONCOCT 1.1.0 – Clustering cONtigs with COverage and ComposiTion

CONCOCT 1.1.0

:: DESCRIPTION

CONCOCT is a program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads.

::DEVELOPER

the Science for Life Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

CONCOCT

:: MORE INFORMATION

Citation

Alneberg J, Bjarnason BS, de Bruijn I, Schirmer M, Quick J, Ijaz UZ, Lahti L, Loman NJ, Andersson AF, Quince C.
Binning metagenomic contigs by coverage and composition.
Nat Methods. 2014 Nov;11(11):1144-6. doi: 10.1038/nmeth.3103. Epub 2014 Sep 14. PMID: 25218180.

RaGOO v1.11 – Fast Reference-Guided Scaffolding of Genome Assembly Contigs

RaGOO v1.11

:: DESCRIPTION

RaGOO is a tool to order and orient genome assembly contigs via Minimap2 alignments to a reference genome.

::DEVELOPER

RaGOO team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / OSX
  • Python

:: DOWNLOAD

RaGOO

:: MORE INFORMATION

Citation

RaGOO: fast and accurate reference-guided scaffolding of draft genomes.
Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC.
Genome Biol. 2019 Oct 28;20(1):224. doi: 10.1186/s13059-019-1829-6.

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