BioContext 1.0 – System for Extraction and Contextualization of Biomedical Events

BioContext 1.0

:: DESCRIPTION

BioContext is a text mining system for extracting information about molecular processes in biomedical articles.Using the data extracted by BioContext, it is possible to get an overview of a range of biomolecular processes relating to a particular gene or anatomical location.

::DEVELOPER

the Nenadic group & the Bergman lab.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • UCSC tools
  • Python

:: DOWNLOAD

 BioContext

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Aug 15;28(16):2154-61. Epub 2012 Jun 17.
BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events.
Gerner M, Sarafraz F, Bergman CM, Nenadic G.