Tag: Constructing

CMGRN – Constructing Multilevel Gene Regulatory Networks

CMGRN

:: DESCRIPTION

CMGRN is a web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data.

::DEVELOPER

Systems bioinformatics lab , Hong Kong Baptist University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Jan 21.
CMGRN: a web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data.
Guan D1, Shao J, Deng Y, Wang P, Zhao Z, Liang Y, Wang J, Yan B.

MCQ-Net – Constructing Phylogenetic Networks from Weighted Quartets

MCQ-Net

:: DESCRIPTION

MCQ-Net is a heuristic algorithm based on the simulated annealing as a method for constructing phylogenetic networks from weighted quartets.

::DEVELOPER

School of Biological Sciences, Iran

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux / MacOsX
  • MatLab

:: DOWNLOAD

 MCQ-Net

:: MORE INFORMATION

GeneInfoViz – Constructing and Visualizing Gene Relation Networks

GeneInfoViz

:: DESCRIPTION

GeneInfoViz is a Gene Ontology tool to construct and visualize gene relation networks. Directed acyclic graphs are also generated to show the hierarchical structure of the Gene Ontology tree.

::DEVELOPER

Yan Cui’s Lab at University of Tennessee Health Science Center

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

In Silico Biol. 2004;4(3):323-33.
GeneInfoViz: constructing and visualizing gene relation networks.
Zhou M, Cui Y.

TripNet – Constructing Phylogenetic Networks from Sparse Sets of Rooted Triplets

TripNet

:: DESCRIPTION

TripNet is an algorithm for constructing phylogenetic networks from sparse sets of rooted triplets.

::DEVELOPER

School of Biological Sciences, Iran

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux / MacOsX
  • MatLab

:: DOWNLOAD

 TripNet

:: MORE INFORMATION

Citation

PLoS One. 2014 Sep 10;9(9):e106531. doi: 10.1371/journal.pone.0106531. eCollection 2014.
TripNet: a method for constructing rooted phylogenetic networks from rooted triplets.
Poormohammadi H, Eslahchi C, Tusserkani R