Tag: Constellation

AccNET V1.2 – Accessory Genome Constellation Network

AccNET V1.2

:: DESCRIPTION

AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms.

:: DEVELOPER

irycis Bioinfo

:: REQUIREMENTS

  • Linux / Window
  • Perl

:: DOWNLOAD

AccNET

:: MORE INFORMATION

Citation

Lanza VF, Baquero F, de la Cruz F, Coque TM.
AcCNET (Accessory Genome Constellation Network): comparative genomics software for accessory genome analysis using bipartite networks.
Bioinformatics. 2017 Jan 15;33(2):283-285. doi: 10.1093/bioinformatics/btw601. Epub 2016 Sep 23. PMID: 27663497.

PLACNET 1.04 / PLACNETw – Plasmid Constellation Network project

PLACNET 1.04 / PLACNETw

:: DESCRIPTION

PLACNET is a graph-based tool for reconstruction of plasmids from next generation sequence pair-end datasets.

PLACNETw, a web tool based on PLACNET, provides an interactive graphic interface, automates BLAST searches, and extracts the relevant information for decision making.

:: DEVELOPER

irycis Bioinfo

:: REQUIREMENTS

  • Linux / Window
  • Python

:: DOWNLOAD

PLACNET / PLACNETw

:: MORE INFORMATION

Citation

Lanza VF, de Toro M, Garcillán-Barcia MP, Mora A, Blanco J, Coque TM, de la Cruz F.
Plasmid flux in Escherichia coli ST131 sublineages, analyzed by plasmid constellation network (PLACNET), a new method for plasmid reconstruction from whole genome sequences.
PLoS Genet. 2014 Dec 18;10(12):e1004766. doi: 10.1371/journal.pgen.1004766. PMID: 25522143; PMCID: PMC4270462.

Vielva L, de Toro M, Lanza VF, de la Cruz F.
PLACNETw: a web-based tool for plasmid reconstruction from bacterial genomes.
Bioinformatics. 2017 Dec 1;33(23):3796-3798. doi: 10.1093/bioinformatics/btx462. PMID: 29036591.

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