MiRScan 3 – Predict microRNA Genes from pairs of Conserved Sequences

MiRScan 3

:: DESCRIPTION

MiRScan is a computational procedure to identify miRNA genes conserved in more than one genome.

MiRScan Online Version

::DEVELOPER

Christopher Burge Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/MacOsX/Linux
Python

:: DOWNLOAD

MiRScan

:: MORE INFORMATION

Citation

Genome Res. 2007 Dec;17(12):1850-64. Epub 2007 Nov 7.
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs.
Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC.

The microRNAs of Caenorhabditis elegans.
Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP.
Genes Dev. 2003 Apr 15;17(8):991-1008. Epub 2003 Apr 2.

PhyloHMM v2 – Proteome-wide Discovery of Evolutionary Conserved Sequences in Disordered regions

PhyloHMM v2

:: DESCRIPTION

PhyloHMM (phylogenetic hidden Markov model) is a website with data, software and supporting materials for conserved sequences in disordered regions

::DEVELOPER

Alan Moses’ Computational Biology Lab,University of Toronto

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

phylo_HMM

:: MORE INFORMATION

Citation

A. N. Nguyen Ba, B. J. Yeh, D. van Dyk, A. R. Davidson, B. J. Andrews, E. L. Weiss, A. M. Moses,
Proteome-wide discovery of evolutionary conserved sequences in disordered regions.
Sci. Signal. (2012) 5, rs1.