PhyloRNAalifold v1 – Predicting Consensus Structures in RNA Alignments by incorporating RNAalifold with Phylogenetic information

PhyloRNAalifold v1

:: DESCRIPTION

PhyloRNAalifold is a program for predicting consensus structures of aligned RNA sequences by incorporating phylogetetic-based covarying mutations.

::DEVELOPER

UCF Computational Biology and Bioinformatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

 PhyloRNAalifold

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2013 Apr 27;14:142. doi: 10.1186/1471-2105-14-142.
Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure prediction.
Ge P, Zhang S.

ConStruct 3.2.5 – RNA Alignment Editor and Consensus Structure Prediction Tool

ConStruct 3.2.5

:: DESCRIPTION

ConStruct (construction of RNA consensus structures) is an RNA alignment editor and consensus structure prediction tool. It combines multiple sequence alignment, thermodynamic structure prediction and statistics in a semiautomatical fashion. Its sophisticated GUI guides the user through correcting an initial sequence alignment with respect to a consensus structure.

::DEVELOPER

Gerhard Steger <steger@biophys.uni-duesseldorf.de>,Heinrich-Heine-Universität Düsseldorf, Institut für Physikalische Biologie, Universitätsstr

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

  ConStruct

:: MORE INFORMATION

Citation:

Wilm, A., Linnenbrink, K. & Steger, G. (2008)
ConStruct: improved construction of RNA consensus structures.
BMC Bioinformatics 9, 219.