MODPEP – Fast Conformer Ensemble Generator of Protein-bound Peptides

MODPEP

:: DESCRIPTION

The MODPEP server is to generate the conformation of protein-bound peptides.

::DEVELOPER

Huang Laboratary

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

MODPEP

:: MORE INFORMATION

Citation:

Yan Y, Zhang D, Huang SY.
Efficient conformational ensemble generation of protein-bound peptides.
J Cheminform. 2017 Nov 22;9(1):59. doi: 10.1186/s13321-017-0246-7. PMID: 29168051; PMCID: PMC5700017.

Suitename 0.3 – RNA Conformer

Suitename 0.3

:: DESCRIPTION

Suitename is a new C program that supports the ROC RNA Ontology Consortium consensus RNA backbone nomenclature and conformer-list development

From dihedral-angle input for a specific RNA structure (usually from Dangle), Suitename categorizes the RNA backbone geometry of each suite (the sugar-to-sugar version of a residue) either as an outlier (“!!”) or as belonging to one of the 53 defined conformer bins.

::DEVELOPER

Richardson Lab

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

  • Windows / Mac /  Linux

:: DOWNLOAD

Suitename

:: MORE INFORMATION

Suitename is free software available under the terms of its own BSD-style license.