Tag: Complexity

ZMM 2020 – Molecular Modeling program for Theoretical studies of systems of any complexity

ZMM 2020

:: DESCRIPTION

ZMM is a molecular modeling program for theoretical studies of systems of any complexity: small molecules, peptides, proteins, nucleic acids, and ligand-receptor complexes.

::DEVELOPER

 

:: SCREENSHOTS

ZMM

:: REQUIREMENTS

  • Windows / Linux / Mac

:: DOWNLOAD

 ZMM

:: MORE INFORMATION

Citation

J Comput Aided Mol Des. 2010 Feb;24(2):91-105. doi: 10.1007/s10822-009-9317-9. Epub 2010 Jan 30.
Docking flexible ligands in proteins with a solvent exposure- and distance-dependent dielectric function.
Garden DP, Zhorov BS.

PLEX 0.95 – Phylogenetics, Likelihood, Evolution, and CompleXity

PLEX 0.95

:: DESCRIPTION

The PLEX package is designed to perform rapid likelihood analysis on large phylogenies using partial sampling of substitution histories.

::DEVELOPER

Pollock Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • Perl
  • R package

:: DOWNLOAD

 PLEX

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Nov 15;28(22):2989-90. doi: 10.1093/bioinformatics/bts555. Epub 2012 Sep 12.
Phylogenetics, likelihood, evolution and complexity.
de Koning AP, Gu W, Castoe TA, Pollock DD.