Tag: Compendium

SEEK – Search-Based Exploration of Expression Compendium

SEEK

:: DESCRIPTION

SEEK is a computational gene co-expression search engine. SEEK provides biologists with a way to navigate the massive human expression compendium that now contains thousands of expression datasets. SEEK returns a robust ranking of co-expressed genes in the biological area of interest defined by the user’s query genes. In the meantime, it also prioritizes thousands of expression datasets according to the user’s query of interest. The unique strengths of SEEK include its support for multi-gene query and cross-platform analysis, as well as its rich visualization features.

::DEVELOPER

Troyanskaya Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

SEEK

:: MORE INFORMATION

Citation

Zhu Q, Wong AK, Krishnan A, Aure MR, Tadych A, Zhang R, Corney DC, Greene CS, Bongo LA, Kristensen VN, Charikar M, Li K, Troyanskaya OG.
Targeted exploration and analysis of large cross-platform human transcriptomic compendia.
Nat Methods. 2015 Mar;12(3):211-4, 3 p following 214. doi: 10.1038/nmeth.3249. Epub 2015 Jan 12. PMID: 25581801; PMCID: PMC4768301.

GeneCards 5.1 – Human Gene Compendium

GeneCards 5.1

:: DESCRIPTION

GeneCards is a searchable, integrated database of human genes that provides comprehensive, updated, and user-friendly information on all known and predicted human genes.

::DEVELOPER

GeneCards team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser 

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Database (Oxford). 2010 Aug 5;2010:baq020. doi: 10.1093/database/baq020.
GeneCards Version 3: the human gene integrator.
Safran M, Dalah I, Alexander J, Rosen N, Iny Stein T, Shmoish M, Nativ N, Bahir I, Doniger T, Krug H, Sirota-Madi A, Olender T, Golan Y, Stelzer G, Harel A, Lancet D.

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