COMPASS 2.01 – Protein Backbone Resonance Assignment

COMPASS 2.01

:: DESCRIPTION

COMPASS is used for protein backbone resonance assignment from unassigned triple resonance peak lists. Compared to most other software for the same purpose, COMPASS lets the user control the assignment process, enabling supreme accuracy. COMPASS is well suited for the assignment of larger deuterated proteins.

::DEVELOPER

Patrik Lundström

:: SCREENSHOTS

compass

:: REQUIREMENTS

  • Linux / Windows/ MacOsX

:: DOWNLOAD

 COMPASS

:: MORE INFORMATION

Citation

Fast and accurate resonance assignment of small-to-large proteins by combining automated and manual approaches.
Niklasson M, Ahlner A, Andresen C, Marsh JA, Lundström P.
PLoS Comput Biol. 2015 Jan 8;11(1):e1004022. doi: 10.1371/journal.pcbi.1004022.

COMPASS 1.0.1 – Generating Serial Samples under an Infinite Sites Model

COMPASS 1.0.1

:: DESCRIPTION

The program COMPASS (COalescence siMulation Program Allowing Serial Samples) generates serial samples collected at various points in time. The samples are generated using coalescence simulations permitting various demographic scenarios.

::DEVELOPER

Jakobsson Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX/ Windows

:: DOWNLOAD

  COMPASS

:: MORE INFORMATION

Citation

Mattias Jakobsson
COMPASS: a program for generating serial samples under an infinite sites model
Bioinformatics (2009) 25 (21): 2845-2847.

COMPASS 3.1 – COmparison of Multiple Protein Sequence Alignments with assessment of Statistical Significance.

COMPASS 3.1

:: DESCRIPTION

COMPASS runs a search with submitted alignment (or sequence) as a query against a database of protein families.

::DEVELOPER

Grishin Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 COMPASS

:: MORE INFORMATION

Citation:

R.I. Sadreyev, M. Tang, B. Kim and N.V. Grishin (2009)
COMPASS server for homology detection: improved statistical accuracy, speed, and functionality.
Nucleic Acids Res doi:10.1093/nar/gkp360.