ADseq – Comparative Scaffolding

ADseq

:: DESCRIPTION

ADseq is a new method, that allows to improve scaffolding of extant genomes and jointly reconstructs gene order in ancestral genomes.

::DEVELOPER

Computational Methods for Paleogenomics and Comparative Genomics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

ADseq

:: MORE INFORMATION

Citation

Anselmetti Y, Duchemin W, Tannier E, Chauve C, Bérard S.
Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes.
BMC Genomics. 2018 May 9;19(Suppl 2):96. doi: 10.1186/s12864-018-4466-7. PMID: 29764366; PMCID: PMC5954271.

GATA 0.7 – Graphic Alignment Tool for Comparative Sequence Analysis

GATA 0.7

:: DESCRIPTION

GATA is a stand alone, platform independent, graphic alignment tool for comparative sequence analysis. It makese use of BLAST to graphically align two DNA sequences creating box-line-box representations of window scored local alignments. Gata can also display extensive gene annotation using a standardized GFF format.

::DEVELOPER

Eisen Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • Java

:: DOWNLOAD

 GATA

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2005 Jan 17;6:9.
GATA: a graphic alignment tool for comparative sequence analysis.
Nix DA, Eisen MB.

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