ASAP 1.4.1 – A Systematic Annotation Package for Community Analysis of Genomes

ASAP 1.4.1

:: DESCRIPTION

ASAP is designed to organize the data associated with a genome from the early stages of sequence annotation through genetic and biochemical characterization, providing a vehicle for ongoing updates of the annotation and a repository for genome-scale experimental data.

::DEVELOPER

Genome Evolution Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux / Mac OsX
  • PHP
  • MySQL

:: DOWNLOAD

 ASAP

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2003 Jan 1;31(1):147-51.
ASAP, a systematic annotation package for community analysis of genomes.
Glasner JD1, Liss P, Plunkett G 3rd, Darling A, Prasad T, Rusch M, Byrnes A, Gilson M, Biehl B, Blattner FR, Perna NT.

GLay – Cytoscape Plugin of Community Analysis

GLay

:: DESCRIPTION

GLay is a cytoscape plugin that offers an assorted collection of community analysis algorithms and layout functions, dynamically linked from igraph.

::DEVELOPER

Microarray Lab, Department of Psychiatry / Molecular and Behavioral Neuroscience Institute, University of Michigan

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

  GLay

:: MORE INFORMATION

Citation

Bioinformatics. 2010 Dec 15;26(24):3135-7. doi: 10.1093/bioinformatics/btq596.
GLay: community structure analysis of biological networks.
Su G1, Kuchinsky A, Morris JH, States DJ, Meng F.

ASAP 1.4.1 – A Systematic Annotation Package for Community Analysis of Genomes

ASAP 1.4.1

:: DESCRIPTION

ASAP is designed to organize the data associated with a genome from the early stages of sequence annotation through genetic and biochemical characterization, providing a vehicle for ongoing updates of the annotation and a repository for genome-scale experimental data. Development was motivated by the need to more directly involve a greater community of researchers, with their collective expertise, in keeping the genome annotation current and to provide a synergistic link between up-to-date annotation and functional genomic data.

::DEVELOPER

Genome Evolution Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX / Windows
  • PHP
  • MySQL

:: DOWNLOAD

 ASAP

:: MORE INFORMATION

Citation:

ASAP, a systematic annotation package for community analysis of genomes.
Glasner JD, Liss P, Plunkett G 3rd, Darling A, Prasad T, Rusch M, Byrnes A, Gilson M, Biehl B, Blattner FR, Perna NT.
Nucleic Acids Res. 2003 Jan 1;31(1):147-51.