CoMet-Universe – Fast Comparative Functional Profiling of Metagenomes

CoMet-Universe

:: DESCRIPTION

CoMet-Universe is a web-server for comparative analysis of metagenomes based on protein domain signatures

::DEVELOPER

Department of Bioinformatics , University of Göttingen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Aßhauer KP, Klingenberg H, Lingner T, Meinicke P.
Exploring neighborhoods in the metagenome universe.
Int J Mol Sci. 2014 Jul 14;15(7):12364-78. doi: 10.3390/ijms150712364. PMID: 25026170; PMCID: PMC4139848.

Lingner T, Asshauer KP, Schreiber F, Meinicke P.
CoMet—a web server for comparative functional profiling of metagenomes.
Nucleic Acids Res. 2011

COMET – Cluster Of Motifs E-value Tool

COMET

:: DESCRIPTION

COMET (Cluster Of Motifs E-value Tool) finds statistically significant clusters of motifs in a DNA sequence. The motifs are represented using 4 x L matrices, which record the frequencies of the nucleotides A, C, G, and T at each position in the motif.

::DEVELOPER

Zlab

:: SCREENSHOTS

Command Line

Web version:

:: REQUIREMENTS

Linux / SUN Solaris 8 / SGI/IRIX/ Mac OS X / Alpha (Compaq Tru64 UNIX V5.0A)

:: DOWNLOAD

COMET

:: MORE INFORMATION

Citation:

Frith MC, Spouge JL, Hansen U, Weng Z
Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences.
Nucleic Acids Res 2002 Jul 15;30(14):3214-24

coMET – Visualisation of EWAS Results in Genomic Region

coMET

:: DESCRIPTION

The coMET package is a web-based plotting tool and R-based package to visualize EWAS (epigenome-wide association scan) results in a genomic region of interest.

::DEVELOPER

coMET team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows / Mac / Linux
R

:: DOWNLOAD

coMET

:: MORE INFORMATION

Citation:

coMET: visualisation of regional epigenome-wide association scan results and DNA co-methylation patterns.
Martin TC, Yet I, Tsai PC, Bell JT.
BMC Bioinformatics. 2015 Apr 28;16(1):131