Tag: Combine

GenGIS 2.5.3 – Combine Digital Map data with Genomic Data

GenGIS 2.5.3

:: DESCRIPTION

GenGIS is a bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environment. GenGIS provides a 3D graphical interface in which the user can navigate and explore the data, as well as a Python interface that allows easy scripting of statistical analyses using the Rpy libraries.

::DEVELOPER

Beiko lab

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 GenGIS

:: MORE INFORMATION

Citation:

Parks DH, Porter M, Churcher S, Wang S, Blouin C, Whalley J, Brooks S and Beiko RG. 2009.
GenGIS: A geospatial information system for genomic data.
Genome Research, 19: 1896-1904

COMUSA – Combining Multiple Clusterings Using Similarity Graph

COMUSA

:: DESCRIPTION

COMUSA is a software for combining the benefits of a collection of clusterings into a final clustering having better overall quality.COMUSA implementation is compared with PMETIS, KMETIS, and k-means. Experimental results on artificial, real, and biological data sets demonstrate the effectiveness of our method. COMUSA produces very good quality clusters in a short amount of time.

::DEVELOPER

Selim Mimaroglu , Ertunc Erdil

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux/Windows / MacOsX
  • Java

:: DOWNLOAD

  COMUSA

:: MORE INFORMATION

Citation:

Bioinformatics. 2010 Oct 15;26(20):2645-6. Epub 2010 Aug 24.
Obtaining better quality final clustering by merging a collection of clusterings.
Mimaroglu S, Erdil E.