COHCAP 1.38.0
:: DESCRIPTION
COHCAP is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). It provides QC metrics, differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, and visualization of methylation values.
::DEVELOPER
Charles Warden <cwarden45 at gmail.com>
:: SCREENSHOTS
:: REQUIREMENTS
- Windows/ Linux/MacOsX
- JRE/ R
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2013 Jun;41(11):e117. doi: 10.1093/nar/gkt242
COHCAP: an integrative genomic pipeline for single-nucleotide resolution DNA methylation analysis.
Warden CD1, Lee H, Tompkins JD, Li X, Wang C, Riggs AD, Yu H, Jove R, Yuan YC.