MRFSeq 0.1 – Gene Expression Analysis using Coexpression and RNA-Seq data

MRFSeq 0.1

:: DESCRIPTION

MRFSeq is a new efficient algorithm based on a Markov random field (MRF) model that uses additional gene coexpression data to enhance the prediction power.

::DEVELOPER

Ei-Wen Yang

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • G++
  • R package

:: DOWNLOAD

 MRFSeq

:: MORE INFORMATION

Citation:

Bioinformatics. 2013 Sep 1;29(17):2153-61. doi: 10.1093/bioinformatics/btt363. Epub 2013 Jun 21.
Differential gene expression analysis using coexpression and RNA-Seq data.
Yang EW1, Girke T, Jiang T.

WeGet – Weighted Gene CoExpression Tool

WeGet

:: DESCRIPTION

WeGET is a computational tool to find mammalian genes that strongly co-express with a human query gene set of interest.

::DEVELOPER

WeGet team (CMBI)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

WeGET: predicting new genes for molecular systems by weighted co-expression.
Szklarczyk R, Megchelenbrink W, Cizek P, Ledent M, Velemans G, Szklarczyk D, Huynen MA.
Nucleic Acids Res. 2015 Nov 17. pii: gkv1228.

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