Cloud-COPASI 2020
:: DESCRIPTION
Cloud-COPASI is a web-based tool for running computationally intensive simulation and analysis tasks in parallel on a high-throughput computing pool.
::DEVELOPER
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Cloud-COPASI is a web-based tool for running computationally intensive simulation and analysis tasks in parallel on a high-throughput computing pool.
::DEVELOPER
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Myrna is a cloud computing tool for calculating differential gene expression in large RNA-seq datasets. Myrna uses Bowtie for short read alignment and R/Bioconductor for interval calculations, normalization, and statistical testing. These tools are combined in an automatic, parallel pipeline that runs in the cloud (Elastic MapReduce in this case) on a local Hadoop cluster, or on a single computer, exploiting multiple computers and CPUs wherever possible.
::DEVELOPER
Ben Langmead, Kasper Hansen, and Jeffrey Leek
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genome Biol. 2010;11(8):R83. doi: 10.1186/gb-2010-11-8-r83. Epub 2010 Aug 11.
Cloud-scale RNA-sequencing differential expression analysis with Myrna.
Langmead B, Hansen KD, Leek JT.
:: DESCRIPTION
Yabi provides users with an intuitive, easy to use, abstraction of compute and data environments.
::DEVELOPER
Centre for Comparative Genomics
:: SCREENSHOTS
N/a
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Yabi: An online research environment for grid, high performance and cloud computing.
Hunter AA, Macgregor AB, Szabo TO, Wellington CA, Bellgard MI.
Source Code Biol Med. 2012 Feb 15;7(1):1. doi: 10.1186/1751-0473-7-1.
:: DESCRIPTION
Contrail is a Hadoop based genome assembler for assembling large genomes in the clouds
::DEVELOPER
Schatz Lab, Cold Spring Harbor Laboratory
:: SCREENSHOTS
N/a
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
CloudBioLinux offers genome analysis resources for cloud computing platforms such as Amazon EC2. The software is a build and deployment system which installs a large selection of Bioinformatics and machine learning libraries on a bare virtual machine (VM) image, freshly installed PC, or in the Cloud.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Curr Protoc Bioinformatics. 2012 Jun;Chapter 11:Unit11.9.
Using cloud computing infrastructure with CloudBioLinux, CloudMan, and Galaxy.
Afgan E, Chapman B, Jadan M, Franke V, Taylor J.