:: DESCRIPTION
HIVcleave is a web-server for predicting HIV protease cleavage sites in proteins
::DEVELOPER
Computational Systems Biology Group, Shanghai Jiao Tong University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation:
Anal Biochem. 2008 Apr 15;375(2):388-90. doi: 10.1016/j.ab.2008.01.012. Epub 2008 Jan 15.
HIVcleave: a web-server for predicting human immunodeficiency virus protease cleavage sites in proteins.
Shen HB1, Chou KC.
:: DESCRIPTION
LabCaS (Labeling Calpain substrate cleavage Sites) is a new computational approach for accurate prediction of the calpain substrate cleavage sites from amino acid sequences.
::DEVELOPER
Computational Systems Biology Group, Shanghai Jiao Tong University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation:
Proteins. 2013 Apr;81(4):622-34. doi: 10.1002/prot.24217. Epub 2012 Dec 24.
LabCaS: labeling calpain substrate cleavage sites from amino acid sequence using conditional random fields.
Fan YX1, Zhang Y, Shen HB.
:: DESCRIPTION
NetChop produces neural network predictions for cleavage sites of the human proteasome.
NetChop has been trained on human data only, and will therefore presumably have better performance for prediction of the cleavage sites of the human proteasome. However, since the proteasome structure is quite conserved, we believe that the server is able to produce reliable predictions for at least the other mammalian proteasomes.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
The role of the proteasome in generating cytotoxic T cell epitopes: Insights obtained from improved predictions of proteasomal cleavage.
M. Nielsen, C. Lundegaard, O. Lund, and C. Kesmir. Immunogenetics., 57(1-2):33-41, 2005.
:: DESCRIPTION
Cascleave is a novel tool developed using Java program for the high-throughput in silico identification of substrate cleavage sites for various caspases from the amino acid sequences of the substrates.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation:
Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets.
Wang M, Zhao XM, Tan H, Akutsu T, C Whisstock J, Song J.
Bioinformatics (2014) 30 (1): 71-80. doi: 10.1093/bioinformatics/btt603
:: DESCRIPTION
MitoFates predicts mitochondrial presequence, a cleavable localization signal located in N-terminal, and its cleaved position.
::DEVELOPER
Computational Biology Research Center (CBRC),
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
MitoFates: Improved Prediction of Mitochondrial Targeting Sequences and Their Cleavage Sites.
Yoshinori Fukasawa, Junko Tsuji, Szu-Chin Fu, Kentaro Tomii, Paul Horton and Kenichiro Imai.
Molecular & Cellular Proteomics, 14(4): 1113-1126, 2015
:: DESCRIPTION
ScreenCap3 is a web-based prediction method, to facilitate the discovery of novel caspase-3 substrates in human proteome.
::DEVELOPER
Computational Biology Research Center[CBRC]
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Proteomics. 2014 Sep;14(17-18):2042-6. doi: 10.1002/pmic.201400002. Epub 2014 Aug 4.
ScreenCap3: Improving prediction of caspase-3 cleavage sites using experimentally verified noncleavage sites.
Fu SC, Imai K, Sawasaki T, Tomii K.