ChromSDE 2.2
:: DESCRIPTION
ChromSDE is a deterministic method , which applies semi-definite programming techniques to find the best structure fitting the observed data and uses golden section search to find the correct parameter for converting the contact frequency to spatial distance.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Windows
- MatLab
:: DOWNLOAD
:: MORE INFORMATION
Citation
J Comput Biol. 2013 Nov;20(11):831-46. doi: 10.1089/cmb.2013.0076.
3D chromosome modeling with semi-definite programming and Hi-C data.
Zhang Z, Li G, Toh KC, Sung WK.