Oligo Heat Map 1.52 – Check Thermodynamical Parameters for PCR primers

Oligo Heat Map 1.52

:: DESCRIPTION

OligoHeatMap (OHM) is a web-application for checking thermodynamical parameters for PCR primers and computing graphical representation to show specificity of target sequences .

::DEVELOPER

Olivier Croce

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • Javascript
  • Php

:: DOWNLOAD

    Oligo Heat Map

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W154-6. Epub 2008 Apr 25.
OligoHeatMap (OHM): an online tool to estimate and display hybridizations of oligonucleotides onto DNA sequences.
Croce O, Chevenet F, Christen R.

Micro-Checker 2.2.3 – Microsatellite Data Checking Software

Micro-Checker 2.2.3

:: DESCRIPTION

Micro-Checker is a Windows application that checks for microsatellite null alleles and scoring errors. It also provides null allele estimates, and adjusts allele and genotypes frequencies.

::DEVELOPER

Cock van Oosterhout, Bill Hutchinson,Derek Wills and Peter Shipley

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 Micro-Checker

:: MORE INFORMATION

Citation

Cock van Oosterhout, Bill Hutchinson,Derek Wills and Peter Shipley
MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data
Molecular Ecology Notes (2004)4, 535–538

RelativeFinder 20100813 – Check Relationships between pairs of Individuals

RelativeFinder 20100813

:: DESCRIPTION

relativeFinder is a program for checking relationships between pairs of individuals. There are many excellent programs that carry out similar tasks. Some of the unique features in relativeFinder are the batch mode options, that allow large jobs to be divided into many smaller jobs (suitable for deployment on a compute cluster environment), and the flexibility of the underlying Merlin engine, which allows relative finder to handle large pedigrees and consider a variety of alternate relationships — including potential relationships specified by the user on the fly!

::DEVELOPER

Abecasis Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 RelativeFinder

:: MORE INFORMATION

HW-QuickCheck 20061121 – Check Genotypes for Agreement with Hardy-Weinberg Expectations.

HW-QuickCheck 20061121

:: DESCRIPTION

HW-QuickCheck is a program for comparing genotypes with Hardy-Weinberg expectations. You paste a list a genotypes into a textbox and HW-QuickCheck tests the genotypes for equilibrium using a nice set of exact tests. It is designed to be used early in the genotyping process so that allelic dropout and null alleles can be detected as soon as possible.

::DEVELOPER

Steven Kalinowski, Ph.D.

:: SCREENSHOTS

::REQUIREMENTS

:: DOWNLOAD

 HW-QuickCheck

:: MORE INFORMATION

Citation

Kalinowski ST (In review)
HW-QuickCheck: an easy-to-use computer program for checking genotypes for agreement with Hardy-Weinberg expectations.
Molecular Ecology Notes. 2006, VOL 6; NUMBER 4, pages 974-979