ScrewFit 1.0.4 – Characterization of Protein Secondary Structures

ScrewFit 1.0.4

:: DESCRIPTION

ScrewFit is an Open Source program for the characterization of protein secondary structures. It provides an efficient description of structural motifs based on simple geometrical assumptions.

::DEVELOPER

Paolo Calligari 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 ScrewFit

:: MORE INFORMATION

Citation:

Biophys Chem. 2009 Apr;141(1):117-23. Epub 2009 Jan 14.
Inhibition of viral group-1 and group-2 neuraminidases by oseltamivir: A comparative structural analysis by the ScrewFit algorithm.
Calligari PA, Kneller GR, Giansanti A, Ascenzi P, Porrello A, Bocedi A.

CarGene 1.0 – Characterization of Sets of Genes based on Metabolic Pathways Analysis

CarGene 1.0

:: DESCRIPTION

CarGene (Charac- terization of Genes) is a software tool, named that helps scientists to validate sets of genes by us- ing the biological knowledge on metabolic pathways stored in the Kyoto Encyclopedia of Genes and Genomes (Kegg), and providing a friendly graphical environment to analyze and compare results generated by dif- ferent clustering and/or biclustering techniques. CarGene is based on the degree of coherence of genes in (bi)clusters with respect to metabolic pathways of organisms stored in Kegg, and provides an estimate of obtaining results by chance, including two statistical corrections (Bon- ferroni, and Westfall and Young). One of the most important features of CarGene is the possibility of simultaneously comparing and statis- tically analyzing the information about many groups of genes in both visual and textual manner. Furthermore, it includes its own web browser to explore in detail the information extracted from Kegg. To show the functionality of CarGene, a test based on the study carried out by Huttenshower et al. is performed.

::DEVELOPER

The Bioinformatics group of Seville(Spain)

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows
:: DOWNLOAD

 CarGene

:: MORE INFORMATION

Citation

Int J Data Min Bioinform. 2011;5(5):558-73.
CarGene: characterisation of sets of genes based on metabolic pathways analysis.
Aguilar-Ruiz JS, Rodriguez-Baena DS, Diaz-Diaz N, Nepomuceno-Chamorro IA.