CentiScaPe 2.2 – Centralities for Cytoscape

CentiScaPe 2.2

:: DESCRIPTION

CentiScaPe is a Cytoscape plug-in for calculating network centralities with numerical and graphical output

::DEVELOPER

The Center for BioMedical Computing (CBMC)

:: SCREENSHOTS

::REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java
  • Cytoscape

:: DOWNLOAD

 CentiScaPe

:: MORE INFORMATION

Citation

Bioinformatics. 2009 Nov 1;25(21):2857-9. doi: 10.1093/bioinformatics/btp517. Epub 2009 Sep 2.
Analyzing biological network parameters with CentiScaPe.
Scardoni G1, Petterlini M, Laudanna C.

MOCCS 2.0 – Motif Centrality Analysis of ChIP-Seq

MOCCS 2.0

:: DESCRIPTION

MOCCS is a method for for clarifying DNA-binding motif ambiguity.

::DEVELOPER

Haruka Ozaki, Ph.D.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • R
  • Perl

:: DOWNLOAD

 MOCCS

:: MORE INFORMATION

Citation

MOCCS: Clarifying DNA-binding motif ambiguity using ChIP-Seq data.
Ozaki H, Iwasaki W.
Comput Biol Chem. 2016 Feb 13. pii: S1476-9271(16)30030-5. doi: 10.1016/j.compbiolchem.2016.01.014.

CentiLib – Computation of network centralities

CentiLib

:: DESCRIPTION

CentiLib is an Add-on for the computation and investigation of weighted and unweighted centralities in biological networks. Even though CentiLib was developed to integrate the computation of centralities into as many tools for the visualisation and analysis of biological networks as possible, it can be used for other types of networks, too.

::DEVELOPER

CentiLib team

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 CentiLib 

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Apr 15;28(8):1178-9. Epub 2012 Mar 5.
CentiLib: comprehensive analysis and exploration of network centralities.
Gräßler J, Koschützki D, Schreiber F.

CentiBiN 1.4.3 – Centralities in Biological Networks

CentiBiN 1.4.3

:: DESCRIPTION

CentiBiN is an application for the calculation and visualization of centralities for biological networks.

::DEVELOPER

Bioinformatics @ IPK Gatersleben

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 CentiBiN

:: MORE INFORMATION

Citation

Björn H. Junker, Dirk Koschützki and Falk Schreiber (2006):
Exploration of biological network centralities with CentiBiN.
BMC Bioinformatics, 7:219