Tag: CELLmicrocosmos

MembraneEditor 2.2.2_2 – Modeling, Visualization and Analysis of PDB-based Membranes

MembraneEditor 2.2.2_2

:: DESCRIPTION

The CELLmicrocosmos MembraneEditor (CmME) interactively generates heterogeneous PDB-based membranes with varying lipid compositions and semi-automatic protein placement. Supports membrane patches and vesicles, microdomains as well as stacking of monolayer and/or bilayer membranes.

::DEVELOPER

the Bioinformatics / Medical Informatics department at Bielefeld University.

:: SCREENSHOTS

MembraneEditor

:: REQUIREMENTS

  •  Linux / Windows/ MacOsX
  • Java

:: DOWNLOAD

 MembraneEditor

:: MORE INFORMATION

Citation

J Chem Inf Model. 2011 May 23;51(5):1165-82. doi: 10.1021/ci1003619. Epub 2011 Apr 19.
CELLmicrocosmos 2.2 MembraneEditor: a modular interactive shape-based software approach to solve heterogeneous membrane packing problems.
Sommer B1, Dingersen T, Gamroth C, Schneider SE, Rubert S, Krüger J, Dietz KJ.

CELLmicrocosmos 4.2 PathwayIntegration – Localization and Visualization of Protein-Interaction Networks in a Virtual Cell

CELLmicrocosmos 4.2 PathwayIntegration

:: DESCRIPTION

The CELLmicrocosmos PathwayIntegration (CmPI) was developed to support and visualize the subcellular localization prediction of protein-related data such as protein-interaction networks.

::DEVELOPER

the Bioinformatics / Medical Informatics department at Bielefeld University.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Java

:: DOWNLOAD

 CmPI

:: MORE INFORMATION

Citation

J Bioinform Comput Biol. 2013 Feb;11(1):1340005. doi: 10.1142/S0219720013400052. Epub 2013 Feb 18.
Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets.
Sommer B1, Kormeier B, Demenkov PS, Arrigo P, Hippe K, Ates Ö, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R.