Vcellid 0.4 /CellID 1.4.6 / Rcell 1.1-8 – Microscope-Based Cytometry Cell-finding, Tracking & Analysis

Vcellid 0.4 /CellID 1.4.6 / Rcell 1.1-8


Cell-ID is an open-source cell-finding, tracking, and analysis package using microscope based cytometry. Cell-ID have been used  to track cells through time courses of cells containing fluorescent reporters, reporters of fluorescence translocation , and FRET reporters.

Vcellid is a graphic user interface for the Cell-ID software developed by Andrew Gordon. It was originally designed to provide a rapid visual feedback of the effects of different segmentation parameter values, and to ease the analysis of cell-tracking time course experiments.

Rcell is an R package for data analysis of Cell-ID output.


Laboratorio de Biologia Molecular de Sistemas



  • Windows / Linux


Vcellid/CellID/ Rcell



Gordon A, Colman-Lerner A, Chin TE, Benjamin KR, Yu, R.C., Brent R: (2007) Single-cell quantification of molecules and rates using open-source microscope-based cytometry. Nat Methods.

Chernomoretz, A., Bush, A.,Yu, R.,Gordon, A., and Colman-Lerner, A., [2008] Using Cell-ID1.4 with R for microscope-based cytometry. Current Protocols In Molecular Biology.