Tag: CellH5

CellH5 / CellH5Browser 1.1 – Format for Data Exchange in High-content screening / Image Browser

CellH5 / CellH5Browser 1.1

:: DESCRIPTION

CellH5 is an HDF5 data format for cell-based assays in high-throughput microscopy, which stores high-dimensional image data along with inter-object relations in graphs

CellH5Browser is an interactive gallery image browser based on the CellH5 data format. For testing download a CellH5 example data set for the CellH5Browser from a time-lapse microscopy dataset.

::DEVELOPER

CellH5 team

:: SCREENSHOTS

CellH5Browser

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • R pacakge/ MatLab / Python

:: DOWNLOAD

  CellH5 / CellH5Browser

:: MORE INFORMATION

Citation:

Bioinformatics. 2013 Jun 15;29(12):1580-2. doi: 10.1093/bioinformatics/btt175. Epub 2013 Apr 16.
CellH5: a format for data exchange in high-content screening.
Sommer C1, Held M, Fischer B, Huber W, Gerlich DW.