C-State 0.2.3 – Query and Plot Chromatin Landscapes across multiple loci and Cell Types

C-State 0.2.3

:: DESCRIPTION

C-State (Chromatin-State) is an interactive platform that enables experimentalists who lack bioinformatics support to investigate epigenetic landscapes across multiple datasets for comparative epigenomic analysis.

::DEVELOPER

Rakesh Mishra Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows /MacOsX

:: DOWNLOAD

C-State

:: MORE INFORMATION

Citation:

Sowpati DT, Srivastava S, Dhawan J, Mishra RK.
C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search.
BMC Bioinformatics. 2017 Sep 13;18(Suppl 10):392. doi: 10.1186/s12859-017-1786-6. PMID: 28929968; PMCID: PMC5606219.

SNPsea 1.0.3 – Identify Cell Types and Pathways Affected by Risk Loci

SNPsea 1.0.3

:: DESCRIPTION

SNPsea is an algorithm to identify cell types and pathways likely to be affected by risk loci. It requires a list of SNP identifiers and a matrix of genes and conditions.

::DEVELOPER

The Raychaudhuri Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows

:: DOWNLOAD

 SNPsea

 :: MORE INFORMATION

Citation

Bioinformatics. 2014 May 10. [Epub ahead of print]
SNPsea: an algorithm to identify cell types, tissues, and pathways affected by risk loci.
Slowikowski K1, Hu X, Raychaudhuri S.