dbCAN2 – Automated CAZyme Annotation

dbCAN2

:: DESCRIPTION

dbCAN2 meta server is a web server for automated Carbohydrate-active enzyme ANnotation.

::DEVELOPER

YIN LAB

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Server

:: DOWNLOAD

NO

:: MORE INFORMATION

Citation

Zhang H, Yohe T, Huang L, Entwistle S, Wu P, Yang Z, Busk PK, Xu Y, Yin Y.
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation.
Nucleic Acids Res. 2018 Jul 2;46(W1):W95-W101. doi: 10.1093/nar/gky418. PMID: 29771380; PMCID: PMC6031026.

eCAMI – Simultaneous Classification and Motif Identification for enzyme/CAZyme annotation

eCAMI

:: DESCRIPTION

eCAMI is a Python package: (i) has the best performance in terms of accuracy and memory use for CAZyme and enzyme EC classification and annotation; (ii) the k-mer-based tools (including PPR-Hotpep, CUPP and eCAMI) perform better than homology-based tools and deep-learning tools in enzyme EC prediction.

::DEVELOPER

YIN LAB @ UNL & ZHANG LAB @ NKU

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

eCAMI

:: MORE INFORMATION

Citation

Xu J, Zhang H, Zheng J, Dovoedo P, Yin Y.
eCAMI: simultaneous classification and motif identification for enzyme annotation.
Bioinformatics. 2020 Apr 1;36(7):2068-2075. doi: 10.1093/bioinformatics/btz908. PMID: 31794006.

Exit mobile version