casper 2.26.0 – Characterization of Alternative Splicing based on Paired-End Reads

casper 2.26.0

:: DESCRIPTION

Casper is an R package for infering alternative splicing from paired-end RNA-seq data

::DEVELOPER

David Rossell <rosselldavid at gmail.com>, Camille Stephan-Otto, Manuel Kroiss, Miranda Stobbe, Victor Pena

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Mac OsX / Windows
R

:: DOWNLOAD

Casper

:: MORE INFORMATION

Citation

Designing alternative splicing RNA-seq studies. Beyond generic guidelines.
Stephan-Otto Attolini C, Peña V, Rossell D.
Bioinformatics. 2015 Jul 27. pii: btv436

CASPER 0.8.2 – Context-Aware Scheme for Paired-End Read

CASPER 0.8.2

:: DESCRIPTION

CASPER is a state-of-the art merging tool in terms of accuracy and robustness. Using this sophisticated merging method, we could get elongated reads from the forward and reverse reads.

::DEVELOPER

Data Science Laboratory, Seoul National University.

:: SCREENSHOTS

n/a

:: REQUIREMENTS

Linux

:: DOWNLOAD

CASPER

:: MORE INFORMATION

Citation:

BMC Bioinformatics. 2014;15 Suppl 9:S10. doi: 10.1186/1471-2105-15-S9-S10. Epub 2014 Sep 10.
CASPER: context-aware scheme for paired-end reads from high-throughput amplicon sequencing.
Kwon S, Lee B, Yoon S.