:: DESCRIPTION
PyLOH is a tool for discovering copy number variations in cancer genomes
::DEVELOPER
CBCL Lab (Computational Biology and Computational Learning) @ UCI
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2014 Apr 21.
Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity.
Li Y1, Xie X.
:: DESCRIPTION
BaalChIP ( Bayesian Analysis of Allelic imbalances from ChIP-seq data) corrects for the effect of background allele frequency on the observed ChIP-seq read counts jointly analyses multiple ChIP-seq samples across a single variant.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genome Biol, 18 (1), 39 2017 Feb 24
BaalChIP: A probabilistic framework for reconstructing intra-tumor phylogenies
I. de Santiago, W. Liu, K. Yuan, M. O’Reilly, CS. Chilamakuri, B. Ponder, K. Meyer, F. Markowetz
