FisHiCal 1.1 – Iterative FISH-based Calibration of Hi-C Data

FisHiCal 1.1

:: DESCRIPTION

FisHiCal integrates Hi-C and FISH data, offering a modular and easy-to-use tool for chromosomal spatial analysis.

::DEVELOPER

Yoli Shavit, Fiona Kathryn Hamey and Pietro Lio’

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/MacOsX
  • R

:: DOWNLOAD

 FisHiCal

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Jul 23. pii: btu491.
FisHiCal: an R package for iterative FISH-based calibration of Hi-C data.
Shavit Y, Hamey FK, Lio P.

KInfer – Calibration of Dynamic Models of Biological Systems

KInfer

:: DESCRIPTION

KInfer generates a generalized mass action model from the chemical equations of reactions and an estimation of the structural parameters of these reactions

::DEVELOPER

The Microsoft Research – University of Trento Centre for Computational and Systems Biology

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux/ MacOsX
  • JRE

:: DOWNLOAD

 KInfer

:: MORE INFORMATION

Citation

Eur Biophys J. 2010 May;39(6):1019-39. doi: 10.1007/s00249-009-0520-3. Epub 2009 Aug 11.
Calibration of dynamic models of biological systems with KInfer.
Lecca P1, Palmisano A, Ihekwaba A, Priami C.