Coot 0.9.6 / WinCoot 0.9.6 – Macromolecular Model Building Tool

Coot 0.9.6 / WinCoot 0.9.6

:: DESCRIPTION

Coot (Crystallographic Object-Oriented Toolkit) is for macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data. Coot displays maps and models and allows model manipulations such as idealization, real space refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers, Ramachandran plots, skeletonization, non-crystallographic symmetry and more.

WinCoot is a build of Coot (using MinGW and GTK) which runs native under Windows (without cygwin emulation)

::DEVELOPER

Coot team

:: SCREENSHOTS

:: REQUIREMENTS

Windows / MacOsX / Linux

:: DOWNLOAD

Coot , WinCoot

:: MORE INFORMATION

Citation

Paul Emsley and Bernhard Lohkamp and William G. Scott and Kevin Cowtan
Features and Development of Coot
Acta Crystallographica Section D – Biological Crystallography 2010,66,486-501

WhichGenes 1.5 – Gene Set building tool

WhichGenes 1.5

:: DESCRIPTION

WhichGenes is a powerful gene set building tool. It allows the user to extract lists of genes from multiple sources in order to use them for further experiments.

::DEVELOPER

SING Group.

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Windows / MacOsX
Java

:: DOWNLOAD

WhichGenes

:: MORE INFORMATION

Citation

Glez-Peña,D., Gómez-López,G., Pisano,D.G., Fdez-Riverola,F. (2009).
WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis.
Nucl. Acids Res. (2009) doi: 10.1093/nar/gkp263