ArboDraw 2006 – Phylogenetic Tree Builder & Viewer

ArboDraw 2006

:: DESCRIPTION

ArboDraw is a program for building and displaying phylogenetic trees of protein and nucleic acid sequences. It can import and display dendrogram files in Newick format (generated by MUSCLE, Phylip, clustalw, etc.). Among the key features are the ability to annotate sequences, and to select and color independently various parts of the tree. A very convenient annotation functionality allows the user to view annotations by placing the mouse above the sequence of interest. Edited and annotated files can be saved and restored at a later time.

::DEVELOPER

Dunbrack Lab

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

ArboDraw

:: MORE INFORMATION

For comments, suggestions and bug reports contact the authors:

SEDA 1.4.0 – SEquence DAtaset builder

SEDA 1.4.0

:: DESCRIPTION

SEDA is an open source application for processing FASTA files containing DNA and protein sequences.

::DEVELOPER

SING Group.

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux

:: DOWNLOAD

SEDA

:: MORE INFORMATION

Citation

Lopez-Fernandez H, Duque P, Vazquez N, Fdez-Riverola F, Reboiro-Jato M, Vieira CP, Vieira J.
SEDA: a Desktop Tool Suite for FASTA Files Processing.
IEEE/ACM Trans Comput Biol Bioinform. 2020 Nov 25;PP. doi: 10.1109/TCBB.2020.3040383. Epub ahead of print. PMID: 33237866.

Atomdroid 1.5.0 – Molecular Viewer/Builder for Android

Atomdroid 1.5.0

:: DESCRIPTION

Atomdroid can be used as a molecular viewer/builder but also gives the opportunity to carry out small calculations using the UFF force field (in accordance to the Open Babel implementation).

::DEVELOPER

The “Computational Chemistry and Biochemistry” (CCB) group

:: SCREENSHOTS

Atomdroid

:: REQUIREMENTS

  • Android

:: DOWNLOAD

 Atomdroid

:: MORE INFORMATION

Citation

Atomdroid: A computational chemistry tool for mobile platforms
J. Feldt, R. A. Mata and J. M. Dieterich
J. Chem. Inf. Model. 52, 1072-1078 (2012)

Jamberoo 11 – Cross-Platform Molecular Editor & Builder

Jamberoo 11

:: DESCRIPTION

Jamberoo (former JMolEditor) is a program for displaying, analyzing, editing, converting, and animating molecular systems.

::DEVELOPER

Dr. Vladislav Vasilyev 

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 Jamberoo

:: MORE INFORMATION