bsmooth-align
:: DESCRIPTION
bsmooth-align (version 0.8.1). This integrates two different pipelines for aligning WGBS data.
bsseq. This is a R package used for smoothing methylation profiles and identifying DMRs.
bsseqData This is an experiment data package for R, containing an example dataset used in the vignettes (chromosome 21 and 22 from 3 normal colon and 3 colon cancer patients).
::DEVELOPER
:: REQUIREMENTS
- Linux / Windows/ MacOsX
- R
- BioCOnductor
:: DOWNLOAD
bsmooth-align, bsseq ,bsseqData
:: MORE INFORMATION
Citation
Genome Biol. 2012 Oct 3;13(10):R83.
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions.
Hansen KD1, Langmead B, Irizarry RA.